Friday, June 27, 2014

PhD position, University of Mainz, Department of Evolutionary Biology

PhD position, University of Mainz, Department of Evolutionary Biology:

"Evolution of ant slavery and the genetic basis of slavemaker and host 
behavior"

We invite applications for a 3-years PhD position at the JG University 
of Mainz, Germany.
The project aims at understanding the evolution of slavemaking and host 
defense behavior and its genetic basis. Our model system are 
/Temnothorax/ ants, in which ant slavery evolved repeatedly and in which 
parasite pressure led to the evolution of multiple host defense 
strategies. In this project, we use a RNA-seq approach to study 
characteristic gene expression patterns in closely related slavemaker 
and host species and compare different behavioural states within and 
between species. Moreover, we will use sequence data to detect 
differentially selected genes between slavemaker and host species with 
the aim to identify genes involved in slavemaker and host evolution. Our 
aim is to link slavemaker phenotype to its underlying genotype, as to 
unravel in future the genetic basis of coevolution in these obligate 
social parasite-host systems.

The position requires a Diploma or Master degree in Biology (or a 
related field). The successful candidate should be highly motivated and 
have a strong background in evolutionary genetics and behavioral 
ecology. Previous research experiences with genomics, transcriptomics, 
bioinformatics, behavioral experiments, or social insects are 
advantageous, but not required. The position is funded by the DFG (65% 
TV-L E13). Students from every nationality are encouraged to apply. The 
working language of the laboratory is English.

Our young group offers an international, dynamic and
interactive scientific environment and state-of the art,
newly equipped laboratories. Information on our scientific
work including recent publications can be found under
http://www.bio.uni-mainz.de/zoo/evobio/318_ENG_HTML.php. For more
information, please do not hesitate to contact us feldmeye@uni-mainz.deor
foitzik@uni-mainz.de. The University of Mainz hosts many excellent
scientific institutions (http://www.uni-mainz.de/eng) and Mainz is a
historic city located on the River Rhine with many students and a rich
social and cultural life (http://www.mainz.de).

Interested candidates should send an application (as a single pdf e-mail
attachment) containing a letter of motivation a brief statement of their
research experience and interests (max. 1 page), a curriculum vitae (with
the grades of their B.Sc and M.Sc), a copy of their Master or Diploma
thesis, and the names and email address of 2-3 potential referees to
Dr. Barbara Feldmeyer (feldmeye@uni-mainz.de) or Dr. Susanne Foitzik
(foitzik@uni-mainz.de).

Barbara Feldmeyer 

PhD position in Evolutionary theory University of Zurich, Switzerland.

Institute of Evolutionary Biology and Environmental Studies, University
of Zurich, Switzerland.

PhD position in Evolutionary theory

The focus of our research is understanding whether or not the details of
the genetic systems underlying phenotypic variation affect the process
of adaptation and how such details may be molded by evolutionary
forces. We are particularly interested in gene multifunctionality,
or pleiotropy, and study both the adaptive consequences (constraints)
and the evolution of gene pleiotropy. The context of this project is
broad and the details will be worked out with the candidate. There is
potential for international collaborations.

Possible topics are:
- co-evolution of gene pleiotropy and gene expression,
- evolution of the genotype-phenotype map of complex traits,
- impact of genetic constraints on the evolution of species' ranges
  under shifting environments.

Required are a strong motivation to pursue a PhD in evolutionary
theory, a strong background in population or quantitative genetics, and
documented skills in modelling. The project should mix computational and
mathematical approaches. Knowledge of a programing language (esp. C/C++)
is required. The lab develops and maintains Nemo, an individual-based
simulation platform (http://nemo2.sourceforge.net) that will serve as
the basic computational simulation tool for the project.

General requirements are a Diploma/Master degree in a relevant
discipline. The ideal candidates will have strong oral and written
communication skills in English and the ability to work and share
ideas in a collaborative environment. Knowledge of German is not
essential but may help with everyday life. The Institute hosts two
seminar series with high-caliber international speakers and works
in close collaboration with scientists of the neighboring research
institutions (ETH, EAWAG, WSL, etc.) The PhD position is within the
Zurich Life Science Graduate School's program in Evolutionary Biology
(http://www.lifescience-graduateschool.ch/).

Interested students should send their application package to
frederic.guillaume@ieu.uzh.ch. The package must include, in one PDF file,
1) a cover letter expressing research interests in accordance with the
position, 2) a complete CV, including previous research experiences, and
3) reference letters of min two academic referees. Please also attach
low resolution copies of official academic transcripts and degrees (if
available), and copies of publications (including MSc thesis). Informal
enquiries are welcomed.

Dr. Frederic Guillaume
Assistant Professor
Institute of Evolutionary Biology and Environmental Studies
University of Zurich
Winterthurerstrasse 190
CH-8057 Zurich
tel: +41 44 635 66 23
office: Y13-G-38
http://www.ieu.uzh.ch/research/evolbiol/ecoevo.html

frederic.guillaume@ieu.uzh.ch

The deadline for applications is July 10th 2014

We are looking for a motivated candidate for a research project described
below.

Position is at the Institute of Genetics and Biophysics - National Research
Council in Napoli, Italy  http://www.igb.cnr.it/
Deadline for applications is 10/07/2014

BACKGROUND -  The understanding of genetic variation is essential to decode
traces that evolution has left in our genomes and whole-genome sequence
data now allow us to do interpret these signals at a resolution never
possible before. Adaptive processes in humans have left signature in the
genome and information about sites putatively under positive selection in
human is now available.Next challenge is to combine this information with
functional interpretation to understand the environmental pressure that
drove
the adaptation and the underlying molecular mechanisms at cellular level.

RESEARCH PROJECT - This project aims to study functional consequences of a
mutation in a gene showing evidences for positive selection in Asians and
Europeans. This gene is implicated in the formation of the skin lipid
barrier and regulated by UV radiation. Alterations of the gene sequence
cause severe forms of skin diseases.
This project will clarify key molecular mechanisms of interaction of humans
with the environment and advance our understanding of the role of
environmental adaptation in modern diseases. Project includes both wet
laboratory experiments (40% ) and bioinformatics analyses (60%) and a
mandatory work experience abroad.

ELIGIBILITY  - Candidates with a master degree either in biology/medicine
or  informatics/mathematics/physics/engineer are equally eligible and in
each case they should be willing to do both wet laboratory and
computational analyses.

SELECTION CRITERIA - The successful applicant will be selected on
documented theoretical and experimental knowledge relevant for the area of
study, knowledge of scientific theory and method, analytical skills,
personal motivation and team working skills. Well-developed English
language skills are required. The applicants are encouraged to provide
supporting documents that substantiate qualifications, e.g.,
knowledge, skills, abilities and experience. Experience with programming
languages is a plus. References and interviews will be used to assess
qualifications of the applicants.

INFORMATION - We encourage to discuss your application before submitting.
Please contact vincenza.colonna@igb.cnr.it.
For more information visit: http://goo.gl/axpzzw and http://www.igb.cnr.it/

APPLICATIONS
Applications should be submitted to vincenza.colonna@igb.cnr.it and should
include:
1. Cover letter
2. CV with information about your:
a) Degrees and education
b) Job experience
c) Independent project �V Masters project title and brief description
d) Language skills
e) References�V name and e-mail addresses of 2�V3 reference persons
3. Research plan �V this should be a personal statement motivating why
   you are applying for this position (maximum 2 pages)
4. Other documents �V other documents you may wish to provide

The deadline for applications is July 10th 2014

would you like to know about the most amazing project ever?
http://www.igb.cnr.it/obilab

interested in Life Science and/or Mathematics? visit http://www.bmtl.it/

Vincenza Colonna
Consiglio Nazionale delle Ricerche
Istituto di Genetica e Biofisica "Adriano Buzzati-Traverso"
piano 1, stanza 20
via Pietro Castellino 111 - 80131 Napoli - IT

tel +39 081 6132 254
fax +39 081 6132 706
skype enza.colonna
email vincenza.colonna@igb.cnr.it

http://www.igb.cnr.it/index.php?id=90&staff_detail=colonna
http://scholar.google.co.uk/citations?user=ufP1EYgAAAAJ&hl=en&oi=ao

Visiting Scientist
The Wellcome Trust Sanger Institute
Wellcome Trust Genome Campus
Hinxton  Cambs. CB10 1SA  UK

email cv1@sanger.ac.uk

vincenza colonna 

Graduate Opportunity (MSc)

Graduate Opportunity (MSc)
Spatial Genomic analysis of North American Mountain Pine Beetle Outbreaks

We are recruiting an MSc student to investigate the spatial genomic
patterns among outbreak populations of mountain pine beetle across
North America.  This will involve collaborative work among a number of
Canada Universities and Canadian Forest Service conducted under funding
to the TRIA project (see www.thetriaproject.ca).  The work will build
upon previous spatial genetic studies (e.g., Samarasekera et al 2012;
Janes et al 2014) by using a genotype-by-sequencing approach to explore
genomic differences among outbreak populations and to identify loci
under selection.  Results of this study will improve our understanding
of the genetic differences among mountain pine beetle outbreaks and
provide needed information for the management and predictive modeling
of future outbreaks.

The qualified student will conduct the majority of their course work and
research at the Prince George campus of the University of Northern BC,
but will also have the opportunity to engage in courses and meetings
involving TRIA members from other Canadian Universities.  UNBC is
a small, but dynamic research intensive university (www.unbc.ca).
The Prince George area offers abundant outdoor recreation activities.
Please see our website for more information on the Natural Resources
and Environmental Studies Graduate Program including degree requirements
and expectations (www.unbc.ca/nres/).

Qualifications: This is a challenging, but rewarding project requiring a
range of interests and aptitudes.  Preferably, the successful applicant
will have a degree in biology or ecology.  Previous experience and
coursework in insect biology, population genetic and/or molecular ecology
are an asset.  The student should be willing to work in a collaborative
environment with multiple University and Government research partners.

Ideally the MSc will begin in Sept 2014, although later start dates
will be considered.  We anticipate a competitive stipend (~20,000/year)
and full funding to support lab and other research activities.

For further information please contact Dr. Brent Murray
(brent.murray@unbc.ca; 1-250-960-5638; http://web.unbc.ca/~murrayb).

Samarasekera NG, Bartell N, Lindgren BS, Cooke JEK, Davis CS, James PMA,
Coltman DW, Mock KE, and Murray BW. (2012)  Spatial Genetic Structure of
the Mountain Pine Beetle (Dendroctonus ponderosae) Outbreak in Western
Canada: Historical patterns and contemporary dispersal. Molecular Ecology,
21:2931-2948.

Janes JK, Li Y, Keeling CI, Yuen MMS, Boone CK, Cooke JEK, Bohlmann
J, Huber PW, Murray BW, Coltman DW and Sperling FAH (2014) How the
mountain pine beetle (Dendroctonus ponderosae) breached the Canadian
Rocky Mountains.  Molecular Biology and Evolution advanced press, April
22, 2014; doi: 10.1093/molbev/msu135

Brent Murray 

Saturday, June 21, 2014

RONPAKU Fellowships for PhD Students.

Japan Society for the Promotion of Science (JSPS) -- RONPAKU Fellowships for PhD Students. The RONPAKU fellowships are a program of the JSPS to support students from Asia, the Middle East, and Africa to pursue PhD degrees from Japanese universities. Each fellow submits a research dissertation co-supervised by an advisor in Japan and an advisor in the fellow's home country. The fellows do not pursue doctoral courses in Japan (i.e., dissertation only). RONPAKU awards about 30 fellowships a year across all subject areas. The application deadline is 27 August 2014 for submissions from Japanese universities; applicants send their documents to their prospective Japanese advisor in advance of this deadline. Link
http://www.jsps.go.jp/english/e-ronpaku/applicationforms.html

Volkswagen Foundation

Postdoctoral Fellowships in the Social Sciences in Sub-Saharan and North Africa
Deadline: 27 June 2014
 
Principal Office: Germany
 
In partnership with the Gulbenkian Foundation, the Volkswagen Foundation's program "Knowledge for Tomorrow" welcomes applications for post-doc fellowships in all disciplines of the social sciences. Research projects of three years are developed and carried out by African scholars and scientists in close cooperation with German partners. The deadline for pre-proposals is 27 June 2014.

Source: http://www.volkswagenstiftung.de/funding/international-focus/

Objective

The funding initiative is open to all disciplines and aims at the development and sustainable reinforcement of research in Sub-Saharan Africa. Research projects, developed and carried out by African scholars and scientists in close cooperation with their German partners, shall provide junior researchers in Africa with an opportunity to enhance their skills and academic qualifications. Special emphasis is put on the development, reinforcement, and extension of academic networks inside Africa beyond existing language barriers.

Scope of Funding

The following call aims at post-docs starting academic careers in Africa. Funding can only be approved for research projects carried out in cooperation with a partner academic institution in Germany, and for Junior and Senior Fellowships with a 36-month duration.
Open Calls
Call for Pre-Proposals for Postdoctoral Fellowships in the Social Sciences in Sub-Saharan and North Africa, jointly funded by the Gulbenkian Foundation and the Volkswagen Foundation. Deadline for pre-proposals: June 27, 2014. Details of conditions and the application procedure can be found under Information for Applicants 81i (pdf).
Call for Pre-Proposals for Postdoctoral Fellowships in the Engineering Sciences. Deadline for pre-proposals: September 5, 2014. Details of conditions and the application procedure can be found under Information for Applicants 81h (pdf).
Workshops, Symposia and Summer Schools in Africa
Applications will only be accepted for processing after previous consultation with the respective contact person.

Background

The funding initiative was introduced in 2003. By way of preparation, the Foundation organized a number of events during which the pertinent parameters were discussed. This applied especially to the researchers on the African side.

From time to time, the Volkswagen Foundation organizes thematic workshops in order to aid the identification of promising areas of future-oriented research and the development of innovative lines of research in a spirit of partner-like cooperation. These meetings are used to discuss the current status of research, identify research issues, and to explore and develop possibilities for cooperation with other researchers and research institutions inside sub-Saharan Africa. Attendance at these workshops is by invitation only. Details of how to apply are posted on the Foundation’s homepage.

Information on previously held thematic workshops.

A genomic approach to uncovering the mechanisms driving host restriction and virulence in louping ill virus

A genomic approach to uncovering the mechanisms driving host restriction
and virulence in louping ill virus

Why particular viruses are able to infect and to cause disease in some
host species but not others are fundamental questions that are critical
for controlling viral pathogens. This project aims to uncocver the
molecular and evolutionary mechanisms underlying host restriction and
virulence of louping-ill virus (LIV), one of several closely related
tick-borne flaviviruses in Europe that exhibit high phenotyopic
variability: whereas LIV mainly causes disease in British sheep and
grouse, other LIV strains and related viruses elsewhere in Europe tend
to affect other livestock species or human hosts. Using a combination
of whole genome sequencing, bioinformatics, in vitro experiments
and reverse genetics the project aims to 1) examine the genome-wide
diversity and evolutionary history of LIV across its current range; 2)
compare the ability of different LIV strains and related virus species
for in vitro growth in a range of host species; 3) to experimentally
verify putative genotype-phenotype relationships through a reverse
genetics system. Through the application of powerful new technologies
and analytic approaches, the project will provide novel insights about
the biology of a significant animal pathogen in the UK and advance our
general understanding of the factors governing virus-host interactions.

Supervisors: Dr Roman Biek; Dr Colin J McInnes; and Dr Alain Kohl 

Application deadline: 31 July 2014
Stipend: £13,726 per annum (2013/14 rate) 
Start date: 1 October 2014 

This exciting studentship opportunity will draw on expertise from
academics within the University of Glasgow and The Moredun Research
Institute. The student will spend an equal percentage of their time at
both locations.

BBSRC WestBio DTP studentships will follow a 4-year PhD model. The
financial package will include a 4-year stipend, approved
University of Glasgow fees and a consumables budget per annum. The
successful student will participate in the robust MVLS College
skills training programme throughout their studies. WestBio
students also spend three months off campus undertaking a
Professional Internship for PhD students (PIPS), please follow
URL for further information regarding the programme structure:
http://www.gla.ac.uk/colleges/mvls/graduateschool/bbsrcwestbiodtp/ (please
note that this project will not involve the Mini-Project rotations as
detailed in the programme structure).

Eligibility 

Qualifications criteria: 
Applicants applying for a BBSRC WestBio DTP studentship must have
obtained, or be about to obtain, a first or upper second class UK
honours degree or the equivalent qualifications gained outside the UK,
in an appropriate area of science or technology.

Residence criteria: 
The BBSRC DTP grant provides funding for tuition fees and stipend
for UK and *EU nationals that meet all the required eligibility
criteria.  *Note that EU nationals must be able to demonstrate
that they have resided in the UK for three years prior to
commencing the studentship. If not, EU nationals are still able
to apply to the programme, but would be eligible to receive a
'fees only' award.  Full qualifications and residence eligibility
details are available here: BBSRC Guide to Studentship Eligibility
-http://www.bbsrc.ac.uk/web/FILES/Guidelines/studentship_eligibility.pdf

How to Apply 

You can apply here:
http://www.gla.ac.uk/research/opportunities/howtoapplyforaresearchdegree/
Within the application, at the programme of study search field option,
please select 'MVLS - BBSRC WestBio DTP Glasgow/Moredun'.

Please note that, in step 6 within the online application process, you
are asked to detail supervisor/project title information. Please detail
the following information:

Supervisors: Dr Roman Biek; Dr Colin J McInnes; and Dr Alain Kohl 
Project title: A genomic approach to uncovering the mechanisms driving
host restriction and virulence in louping ill virus

Please ensure that all supporting documents are uploaded at point of
application:

-  Academic ability evidence 
-  CV/Resume 
-  Degree certificate (if you have graduated prior to 1 July 2014) 
-  Language test (if relevant) 
-  Passport 
-        Personal statement (This should provide any other required
         information in support of the application, such as evidence of
         previous academic or professional experience that qualifies you
         for the programme (projects; placements; voluntary work etc).
         You should state the reasons why you selected this programme
         and what benefit you hope to achieve through successful
         completion of the programme. The statement should include
         information about lab techniques you have used and research
         projects in which you have been involved. The statement should
         not be longer than one A4 page)
-        Reference 1 (should be from an academic who has knowledge of
         your academic ability from your most recent study/programme)
-        Reference 2 (should be from an academic who has a knowledge of
         your academic ability)
-        Transcript 

General enquiries regarding the programme and application procedure
should be directed to Alexis Merry: [Alexis.Merry@glasgow.ac.uk].

Roman.Biek@glasgow.ac.uk

PhD position in Evolutionary theory

Institute of Evolutionary Biology and Environmental Studies, University
of Zurich, Switzerland.

PhD position in Evolutionary theory

The focus of our research is understanding whether or not the details of
the genetic systems underlying phenotypic variation affect the process
of adaptation and how such details may be molded by evolutionary
forces. We are particularly interested in gene multifunctionality,
or pleiotropy, and study both the adaptive consequences (constraints)
and the evolution of gene pleiotropy. The context of this project is
broad and the details will be worked out with the candidate. There is
potential for international collaborations.

Possible topics are:
- co-evolution of gene pleiotropy and gene expression,
- evolution of the genotype-phenotype map of complex traits,
- impact of genetic constraints on the evolution of species' ranges
  under shifting environments.

Required are a strong motivation to pursue a PhD in evolutionary
theory, a strong background in population or quantitative genetics, and
documented skills in modelling. The project should mix computational and
mathematical approaches. Knowledge of a programing language (esp. C/C++)
is required. The lab develops and maintains Nemo, an individual-based
simulation platform (http://nemo2.sourceforge.net) that will serve as
the basic computational simulation tool for the project.

General requirements are a Diploma/Master degree in a relevant
discipline. The ideal candidates will have strong oral and written
communication skills in English and the ability to work and share
ideas in a collaborative environment. Knowledge of German is not
essential but may help with everyday life. The Institute hosts two
seminar series with high-caliber international speakers and works
in close collaboration with scientists of the neighboring research
institutions (ETH, EAWAG, WSL, etc.) The PhD position is within the
Zurich Life Science Graduate School's program in Evolutionary Biology
(http://www.lifescience-graduateschool.ch/).

Interested students should send their application package to
frederic.guillaume@ieu.uzh.ch. The package must include, in one PDF file,
1) a cover letter expressing research interests in accordance with the
position, 2) a complete CV, including previous research experiences, and
3) reference letters of min two academic referees. Please also attach
low resolution copies of official academic transcripts and degrees (if
available), and copies of publications (including MSc thesis). Informal
enquiries are welcomed.

Dr. Frederic Guillaume
Assistant Professor
Institute of Evolutionary Biology and Environmental Studies
University of Zurich
Winterthurerstrasse 190
CH-8057 Zurich
tel: +41 44 635 66 23
office: Y13-G-38
http://www.ieu.uzh.ch/research/evolbiol/ecoevo.html

frederic.guillaume@ieu.uzh.ch

Two PhD Positions in Ecology and Evolution of Fishes

Two PhD Positions in Ecology and Evolution of Fishes

Two PhD positions are being offered at the Department of
Zoology, Karl Franzens University Graz, Austria.  The positions
offer a 3- year salary funded directly through the University
under the new collaborative PhD educational program, assigned
to the Evolutionary Biology and Molecular Ecology research group
(http://zoologie.uni-graz.at/en/forschen/kategorie41/evolutionsbiologie-und-molekular-oekologie/).
The PhD candidates are affiliated to the Doctoral School of Biology
of the University of Graz, and are expected to spend some time in the
lab of the respective cooperation partners during their PhD studies. A
detailed research plan will be adapted with input from the prospective
candidates. One PhD position will focus on topics related to salmonid
fishes and second to cichlid fishes, both using molecular genetic and
genomic approaches.

The research with salmonid fishes will be carried out in cooperation
with Ulrich Schliewen at the Natural History Museum in Munich.

The research on cichlid fishes in cooperation with the lab of Prof. Axel
Meyer at the Department of Biology of the University of Konstanz.

CVs should be sent to either Steven Weiss (steven.weiss@uni-graz.at) or
Christian Sturmbauer (christian.sturmbauer@uni-graz.at) by June 30, 2014.
Candidates should expect to start approximately September 1st  2014.

Steven Weiss, Assoc. Prof Dr.
Karl-Franzens University Graz
Institute of Zoology
Universititätsplatz 2
A-8010 Graz, Austria
Tel: +43-0316-380-5599
Fax:+43-0376-380-9875

"Weiss, Steven (steven.weiss@uni-graz.at)" 

PhD position, University of Mainz, Department of Evolutionary Biology:

PhD position, University of Mainz, Department of Evolutionary Biology:

"Evolution of ant slavery and the genetic basis of slavemaker and host 
behavior"

We invite applications for a 3-years PhD position at the JG University 
of Mainz, Germany.
The project aims at understanding the evolution of slavemaking and host 
defense behavior and its genetic basis. Our model system are 
/Temnothorax/ ants, in which ant slavery evolved repeatedly and in which 
parasite pressure led to the evolution of multiple host defense 
strategies. In this project, we use a RNA-seq approach to study 
characteristic gene expression patterns in closely related slavemaker 
and host species and compare different behavioural states within and 
between species. Moreover, we will use sequence data to detect 
differentially selected genes between slavemaker and host species with 
the aim to identify genes involved in slavemaker and host evolution. Our 
aim is to link slavemaker phenotype to its underlying genotype, as to 
unravel in future the genetic basis of coevolution in these obligate 
social parasite-host systems.

The position requires a Diploma or Master degree in Biology (or a 
related field). The successful candidate should be highly motivated and 
have a strong background in evolutionary genetics and behavioral 
ecology. Previous research experiences with genomics, transcriptomics, 
bioinformatics, behavioral experiments, or social insects are 
advantageous, but not required. The position is funded by the DFG (65% 
TV-L E13). Students from every nationality are encouraged to apply. The 
working language of the laboratory is English.

Our young group offers an international, dynamic and
interactive scientific environment and state-of the art,
newly equipped laboratories. Information on our scientific
work including recent publications can be found under
http://www.bio.uni-mainz.de/zoo/evobio/318_ENG_HTML.php. For more
information, please do not hesitate to contact us feldmeye@uni-mainz.deor
foitzik@uni-mainz.de. The University of Mainz hosts many excellent
scientific institutions (http://www.uni-mainz.de/eng) and Mainz is a
historic city located on the River Rhine with many students and a rich
social and cultural life (http://www.mainz.de).

Interested candidates should send an application (as a single pdf e-mail
attachment) containing a letter of motivation a brief statement of their
research experience and interests (max. 1 page), a curriculum vitae (with
the grades of their B.Sc and M.Sc), a copy of their Master or Diploma
thesis, and the names and email address of 2-3 potential referees to
Dr. Barbara Feldmeyer (feldmeye@uni-mainz.de) or Dr. Susanne Foitzik
(foitzik@uni-mainz.de).

Barbara Feldmeyer 

Doctoral Research Fellowship in Evolutionary Genomics/Behavioural Ecology

Doctoral Research Fellowship in Evolutionary Genomics/Behavioural Ecology

A 4-year PhD position is available at the Natural History Museum (NHM),
University of Oslo (UiO). The PhD project is part of a larger research
program on  $B!H (BSperm-pathogen interactions and the evolution of ejaculate
antimicrobial defences in passerine birds $B!I (B.

Animals are constantly exposed to pathogens, and the ability of
individuals to combat microbial attack is an important component
of fitness. Sperm cells are not immune to microbial exposure, and
bacteria can cause reductions in sperm quality and compromise male
fertility. Moreover, ejaculate-borne pathogens can be transferred during
mating (i.e. STDs), with negative consequences for female fertility. Thus,
ejaculate-borne bacteria are predicted to generate intense selection
for the evolution of antibacterial substances in seminal fluid. This
project integrates organismal and molecular approaches to develop
an understanding of the role of bacteria in the evolution of avian
seminal fluid and factors that minimise bacterial-induced sperm defects
and limit the transmission of STDs. The successful candidate will be
allowed to focus on either the evolutionary genomics or the behavioural
ecology aspects of the larger study (or some combination of these two)
as best fits her/his skills and research interests. She/he will also be
encouraged to develop additional, complementary avenues of research.

Interested candidates should have a good degree in a relevant subject,
such as background in evolutionary biology or behavioural ecology. In
addition, an interest in evolutionary genomics and previous fieldwork and
bird handling experience would be advantageous. The position is affiliated
with the Sex and Evolution Research Group (SERG) at the Natural History
Museum (NHM) and the Centre for Ecological and Evolutionary Synthesis
(CEES), and may also include a period of time based in the laboratory
of Dr Steve Dorus (Syracuse University, USA). The research team will
also include scientists from the USA and Germany. The working language
will be English. Fieldwork may be conducted at a variety of locations,
including Norway and Italy.

Informal enquiries can be made to Melissah Rowe:

melissah.rowe@nhm.uio.no

For more information and how to apply:
http://uio.easycruit.com/vacancy/1198865/71922?iso=gb

Melissah Rowe
Research Fellow
Natural History Museum
University of Oslo
Norway

melissah.rowe@nhm.uio.no

melissah rowe 

Wednesday, June 18, 2014

A 3-year postdoctoral research position in Evolutionary Genomics and Molecular and Cellular biology

Postdoctoral position in Evolutionary Genomics and Molecular and 
Cellular biology 

A 3-year postdoctoral research position is available to investigate the 
*/Molecular and cellular mechanisms of hyper-resistance to stress in the 
ameiotic bdelloid rotifer /Adineta vaga. *The research will be conducted 
in the group of Biochemistry, Biophysics and Molecular Genetics of 
Micro-organisms at the Catholic University of Louvain (UCL, Belgium) to 
take part in a collaborative ARC research program with the Research 
Units in Environmental and Evolutionary Biology (URBE) and in Cellular 
Biology (URBC) at the University of Namur (UNamur, Belgium).

This postdoc position is embedded within the research project entitled: 
/Asexuality and 'immortality', bdelloid rotifers as an evolutionary 
'scandal' and a model system in biology. /This project is funded during 
5 years and will start in October 2014.

*
PIs of the project:*

*Prof. Bernard Hallet (ISV, UCL), Prof. Karine Van Doninck (URBE, 
UNamur), *Dr. Florence Debacq-Chainiaux (URBC, UNamur)**

The involved consortium brings together experts in the fields of 
evolutionary biology and genomics of bdelloid rotifers (K. Van Doninck, 
URBE, UNamur), DNA recombination and genome plasticity (B. Hallet, ISV, 
UC) and oxidative stress response (F. Debacq-Chainiaux, URBC, UNamur). 
The appointed candidate will be expected to share its research time on 
both sites under the supervision of the three PIs of the consortium. The 
universities are at a distance of 35km from each other and easily 
connected by train.

*Project:*

Bdelloid rotifers are micro-organisms (animals) that have recently 
attracted much interest in the scientific community because of their 
ancient asexuality and their extreme resistance to stress, such as 
desiccation and high doses of ionizing radiation. They are capable to 
survive when their genome is shattered into small fragments and repair 
the DNA double strands breaks (DSBs) *(see Hespeels et al., JEB 2014)*. 
Repeated cycles of chromosomal repair are thought to promote allelic 
recombination and gene conversion in the absence of meiosis. Moreover 
desiccation and the induced DNA DSBs are also thought to provide a 
unique opportunity to acquire horizontally transferred genes, thereby 
contributing to the adaptive success of these organisms.

In this project, the mechanisms that make bdelloid rotifers unique in 
terms of evolutionary strategy and hyper-resistance to stress will be 
investigated based on genomic data recently obtained by our consortium 
for the bdelloid rotifer /Adineta vaga/ headed by Prof. Karine Van 
Doninck (*see Flot et al, 2013, Nature 500:453-7*). Genomic approaches 
will be used to study the dynamics of /A. vaga/ genome during cycles of 
desiccation/rehydration/radiationand to decipher the genetic expression 
program that governs the different stages of its life-style. Molecular 
and cellular approaches will be developed to unveil and characterize the 
mechanisms that allow /A. vaga/ to repair its shattered chromosomes and 
generate genetic diversity,as well as its dependence with respect to 
oxidative stress response. The ultimate prospect of the project is to 
establish bdelloid rotifers as a new model system for the understanding 
of fundamental biological processes such as DNA repair, cell survival 
and senescence.

*Contacts:*

*Prof. Bernard Hallet, **Bernard.hallet@uclouvain.be 
*

Université Catholique de Louvain. Institut des Sciences de la Vie (ISV)

http://www.uclouvain.be/en-isv.html

*Prof. Karine Van Doninck, **karine.vandoninck@unamur.be 
*

University of Namur, Laboartory of Evolutionary Genetics and Ecology 
(http://www.lege-unamur.be/)

*Qualifications:*

We are looking for a post-doc with a strong interest and background in 
evolutionary genomics and molecular and cell biology. Expertise in the 
field of DNA repair and recombination, chromosome structure and 
dynamics, and/or genomics (NGS approach) is a valuable asset. Additional 
experience in cell biology techniques like DNA transfection, 
immuno-localization, fluorescence hybridization and microscopy will be a 
benefit. Priority will be given to candidates with a proven track record 
(with several publications as a first author) who will express their 
motivation in developing their autonomy and their interest for new 
challenges.

*Application://*

The position is available to both foreign nationals and Belgian citizens 
under 'international mobility' status, meaning that they may not have 
resided in Belgium for more than 12 months over the past 3 years 
preceding the appointment. The duration is for 2 years (with a possible 
1-year renewal) starting on the *1^st of October 2014. *The closing date 
for applications is *August 31^st 2014.*

Interested applicants should send a cover letter (briefly describing 
research experience, interests, and career goal), a curriculum vitae 
(with list of publications), and the names of three references (With 
address, phone number and E mail) to Bernard HALLET 
(Bernard.hallet@uclouvain.be )

-- 

Karine VAN DONINCK
Full Professor
Department of Biology

T. +32 (0)81 724 407
F. +32 (0)81 724 362
karine.vandoninck@unamur.be 
http://perso.fundp.ac.be/~kvandoni/ 

Université de Namur ASBL
Rue de Bruxelles 61 - 5000 Namur
Belgique

Let's respect the environment together.
Only print this message if necessary!

Karine Van Doninck 

2 years postdoctoral position starting in september 2014 in the area of demogenetics

Dear Colleagues,

The flagship project of BASC labex (http://www6.inra.fr/basc) on the 
improvement of adaptive capacities of socioecosystems is providing a 2 
years postdoctoral position starting in september 2014 in the area of 
demogenetics.

The researcher will be based in the CNRS / IRD laboratory LEGS / BEI in 
Gif-sur-Yvette (http://www.legs.cnrs-gif.fr/?page_id=1066), and its 
activities will be held in collaboration with BASC teams.

*Context: *

Species distribution and their response to global changes result from 
both neutral spatial dynamic processes and environmental niche 
processes. Population genetic data harbor information on both processes 
and improvements in model based statistical analysis of genetic 
distributions could help putting them together in orde'r to develop more 
realistic models of species responses to environment.

*Profile:*
The candidate should have an experience in statistical inference, 
bayesian or frequentist, and markov chains.

*Activities:*

The researcher will develop in collaboration with population biologists 
and biostatisticians of Paris-Saclay IDEX, a bioinformatic tool for the 
inference of statistical models from genetic and environmental data 
available on insects, plants, and plant pathogens, in BASC labex teams.

*Recruitment:*
Recruitment will last 2 years and should start in September 2014. Please 
send CV, motivation letter and recommendation letters before july 15th 
2014 to dupas@legs.cnrs-gif.fr and 
tenaillon@moulon.inra.fr.

For more information on specific activities to be held, please contact 
Stéphane Dupas, tel. +33 169823725, dupas@legs.cnrs-gif.fr 

Stéphane Dupas

IRD BEI c/o CNRS LEGS
1 av Terrasse
91198 Gif-sur-Yvette
France
http://www.legs.cnrs-gif.fr/perso.php?id=dupas
Tel +33 1 69 82 37 04
Fax +33 1 69 82 44 48

Stéphane Dupas 

PhD Scholarship - Deep Sea Community Phylogenetics

PhD Scholarship - Deep Sea Community Phylogenetics

A PhD scholarship is being offered for study in the School of Biological
Sciences at the University of Canterbury, New Zealand, with Dr Sharyn
Goldstien and Dr Travis Horton, in collaboration with Senior Fisheries
Scientist from leading  research institutes: Dr Ashley Williams
(Secretariat of the Pacific Community), Dr Malcolm Clark (NIWA), and Dr
Stephen Newman (Western Australia Fisheries).

We seek a high-calibre student to integrate phylogenetics and spatial
ecology to be modelled against isoscapes, magnetic field maps and
fishing pressure, with the aim to integrate spatial diversity patterns
and potential drivers of diversification in deep-sea habitats.

Our research team members have unique access to comprehensive ecological
data sets and biological samples throughout the Pacific, including New
Zealand, Australia, New Caledonia and the Kingdom of Tonga. Our skill
set allows the integration of phylogenetics and molecular ecology with
fundamental ecology, biology and fisheries science, essential to the
advancement of deep-sea science and comparative biogeography.

This is a chance for a passionate student to join an international
team of scientists focused on advancing deep sea science and ensuring
sustainable use of these important resources.

Scholarship Details and Application

The scholarship consists of a NZ $20,000 per annum student stipend (i.e.,
tax free living allowance) and funding to cover course fees and research
expenses for three years.

Applications should be sent via e-mail to Nicki Judson
(nicki.judson@canterbury.ac.nz), administrative assistant in the School
of Biological Sciences, by 9 July 2014, and should include:

1. (i)  a full curriculum vitae (including phone contact details), 2. (ii)
 a copy of your academic record, 3. (iii)  a one page statement of your
research interests and aspirations, 4. (iv)  the names and contact details
of three referees who are willing to provide confidential comments on
your capacity to undertake a PhD, and 5. (v)  an indication of your
desired start date.

Successful applicants may be required to submit copies of official
documents before being admitted to the PhD program at the University
of Canterbury. Questions of an academic nature can be addressed to Dr
Sharyn Goldstien, Sharyn.goldstien@canterbury.ac.nz

Thank you
Dr Sharyn Goldstien
Marine Ecology and Evolution
School of Biological Sciences
University of Canterbury
PB 4800, Christchurch, 8140
New Zealand

Tel: +64 3 3642987 x. 45646
Fax: +64 3 3642590
www.canterbury.ac.nz/people/goldstien.shtml 

sharyn.goldstien@canterbury.ac.nz

Saturday, June 14, 2014

Post-Doc for Theoretical Community Ecology at Potsdam, Germany

Post-Doc for Theoretical Community Ecology at Potsdam, Germany

Pending final approval of funding we offer a full time position for
3 years with a potential second funding period of 3 more years at
the department of Ecology/Ecosystem Modelling at Potsdam University
(German salary scale E 13, 100%). The position is available within
the recently established Priority Programme “Flexibility matters:
Interplay between trait diversity and ecological dynamics using aquatic
communities as model systems” (www.DynaTrait.de) funded by the German
Science Foundation (DFG). We are seeking a highly motivated and productive
scientist who is interested and capable of contributing to a modelling
team closely interacting with experimentalists conducting laboratory
food web experiments. She/he should have strong research interests
in community and trait-based ecology (e.g. dynamics of predator-prey
and multi-trophic systems), and in the role of adaptability for system
dynamics in particular (e.g. via eco-evolutionary dynamics). The work
includes developing and analyzing predator-prey and food web models which
account for ongoing mutual adaptations of trait values among interacting
organisms related to corresponding experiments.

The ideal candidate holds a Ph.D., has an excellent publication
record in the field of theoretical ecology and ecological modelling
and comprehensive skills in working with systems of differential
equations. Prior Post-Doc experience, skills in time-series analysis
and interest in co-supervising students is highly welcome. The modelling
team, consisting of Post-Docs, Ph.D. and Master students, is supervised by
Prof. Dr. Ursula Gaedke and Prof. Dr. Horst Malchow (Univ. Osnabrück) and
provides a very stimulating research environment for promoting theoretical
ecology by modelling and empirical studies. The position may be suitable
to strive for a Habilitation. Fluency in English is essential but gaining
some control of the German language is expected. Potsdam (near Berlin,
Germany) is an attractive town of about 170,000 inhabitants.  It is an
UNESCO world heritage and due to its close vicinity to Berlin covers a
broad spectrum of all kinds of cultural activities.

For further information please visit
http://www.uni-potsdam.de/en/ibb/researchgroups/fullprofessors/ecology-and-ecosystem-modelling.html
or contact U. Gaedke (gaedke@uni-potsdam. de). Applications should include
a statement of motivation, a detailed CV with the list of publications,
contact details of academic referees and degree certificates. Please
send them electronically, if possible as a single file, to U. Gaedke. The
position is open until it gets filled. The “12-years-rule” does not
apply for this position.

lbecks@evolbio.mpg.de

Friday, June 13, 2014

University of Miami will soon have an opening for a postdoc.

The Wilson Group in the Department of Biology at the University of Miami
will soon have an opening for a postdoc.

Work in the Wilson Group focuses on symbiosis in sap-feeding insect
systems.  We ask questions about genome coevolution and host/symbiont
metabolic collaboration.  Current research is focused on amino acid
transport in the context of metabolic and developmental integration of
obligate intracellular symbionts and their insect hosts.

Recent publications from our group include:

Price, D. R. G., Feng, H., Baker, J. D., Bavan, S., Luetje, C. W., &
Wilson, A. C. C. (2014). Aphid amino acid transporter regulates glutamine
supply to intracellular bacterial symbionts. Proceedings of the National
Academy of Sciences of the United States of America, 111(1), 320¡V325.

Duncan, R. P., Husnik, F., McCutcheon, J. P., & Wilson,
A. C. C. (2014). Dynamic recruitment of amino acid transporters to the
insect/symbiont interface. Molecular Ecology, 23(6), 1608¡V1623.

Wilson Group PI, Alex Wilson is attending the Evolution 2014 meeting in
Raleigh, NC.  If you are interested in this opportunity and will be at
Evolution 2014 please contact Alex by email at acwilson@bio.miami.edu
to arrange a time to meet during the conference.

Alex C. C. Wilson, PhD
Associate Professor of Biology
University of Miami

1301 Memorial Drive, Coral Gables, FL 33146, USA.
Cox Science Building, Room 253

Lab: 305 284 2003 -  Fax: 305 284 3039

acwilson@bio.miami.edu
http://www.bio.miami.edu/acwilson

Alex Wilson 

Two Postdoctoral Research Associates in the areas of Comparative Genomics

The Wilson Sayres Lab at Arizona State University in Tempe, AZ
is recruiting two Postdoctoral Research Associates in the areas
of Comparative Genomics, Statistics, and Bioinformatics to develop
methodologies and study evolutionary questions related to sex chromosome
evolution and sex biased processes, primarily in mammals, but also
other taxa.  Successful applicants will join a rapidly growing lab
involved in a variety of active research projects and collaborations.
Current projects include (1) assessing the magnitude and effect of male
mutation bias, (2) simulating patterns of demography and selection on sex
chromosomes, (3) determining the timing of recombination suppression on
mammalian sex chromosomes, (4) measuring patterns of expression evolution
on the active and inactive X chromosomes, (5) identifying signatures of
positive selection across mammals proteomes (including sperm proteome),
(6) identifying signals of convergent molecular evolution.

The Wilson Sayres Lab is part of the Center for Evolutionary Medicine
and Informatics (CEMI), one of 10 research centers in the Arizona State
University's Biodesign Institute. Research in the Wilson Sayres Lab
covers many different questions in population genetics and molecular
evolution, at the interface of biology, statistics, and computer
science. Lab members have the opportunity to develop both dry-lab and
wet-lab research programs.

Required Qualifications: 
Ph.D. in genomics, bioinformatics, or a related field

Desired Qualifications: 
1. Experience working with genomes and evolutionary analyses
2. Knowledge of programming languages
3. Knowledge of statistical methodologies
4. Experience parsing and analyzing large datasets (e.g. RNAseq)
5. Understanding of sex chromosome evolution

Application must contain: 
1. Curriculum Vitae (max 2 pages)
2. Cover Letter describing your previous research and future research
   plans (max 1 page)
3. Names, addresses, and phone numbers of three professional references

Applications will continue to be accepted and considered until the job
is filled/closed.

For more information see
https://sites.google.com/site/mwilsonsayres/research.

To apply, forward one document that includes a cover letter, detailed
CV, and names of 3 references to mwilsonsayres@gmail.com. Please put
the job title in the subject line of the letter.

Arizona State University is an Equal Opportunity/Affirmative Action employer.
A background check is required for employment.

Sara Brashier 

DrexelU.Bioinformatics PostDOcs

Drexel University hosts two programs in central Africa, the Central
African Biodiversity Alliance (www.CABAlliance.org) and the Bioko
Biodiversity Protection Program (www.Bioko.org), which operate in
Cameroon, Equatorial Guinea and Gabon. We seek a highly qualified and
enthusiastic individual to join our team to conduct bioinformatics
analyses, develop statistical methods, and analyze population-level
genetic data of select animals and plants from Central Africa.

The successful candidate will be expected to analyze and manage genomic
sequence from samples collected in central Africa and contribute to
the analysis of comprehensive SNP genotypes from wild chimpanzees
and an arrowroot plant. The incumbent will be encouraged to develop
her/his own research focus on some aspect(s) of the project, which will
include examining gene-environment relationships in insects, reptiles
and amphibians across an elevational gradient from the Gulf of Guinea
rainforest to the Cameroon Highlands.  The successful candidate will have
demonstrated experience in next generation sequencing analyses as well as
strong computational skills, including proficiency in at least one major
programming or scripting language (preferably Python, but others apply)
and use of a Linux/Unix environment.  A good understanding of molecular
and evolutionary biology, statistics and proficiency in R is a plus.

The postdoctoral researcher will join the laboratory of Dr. Katy Gonder
(http://www.drexel.edu/biology/contact/facultyDirectory/Gonder/) . The
researcher will be expected to collaborate closely with our team of
postdoctoral researchers and students at Drexel and in central Africa. The
position will also include collaboration with other CABAlliance research
groups, including Dr. Tom Smith's group at UCLA and Dr. Nicola Anthony's
group at the University of New Orleans.

Inquiries about this position can be directed to
Dr. Matthew Mitchell (mwmitchell@drexel.edu) with a subject of
Bioinformatics Postdoc.  Please apply for this position online at:
https://www.drexeljobs.com/applicants/jsp/shared/frameset/Frameset.jsp?time=1402452521926
or visit www.drexeljobs.com and search for 'bioinformatics.' The
requisition number is 6189.

The position is available from September 1, 2014 for one year with the
possibility of renewal for up to three years.  Salary will be determined
based on experience level.

Dr. Katy Gonder

Associate Professor
Department of Biology
Drexel University
3245 Chestnut St. 
Philadelphia, PA 19104

gonder@drexel.edu

Graduate position: AMU_Poznan.MHCEvolutionGuppy

Graduate position: AMU_Poznan.MHCEvolutionGuppy

PhD position in evolutionary biology is available for four years starting
from 1st October 2014 in a project “Testing new MHC allele advantage in
semi-natural populations of the guppy, Poecillia reticulata”. This
collaborative project is led by Professor Jacek Radwan (Adam Mickiewicz
University, Poznan), Dr Cock van Oosterhout (University of East Anglia) and
Dr Joanne Cable (Cardiff University, School of Biosciences), and is funded
by Polish Science Centre (NCN).

Genes of the Major Histocompatibility Complex (MHC), involved in parasite
recognition, are crucial for the adaptive immune response in vertebrates.
While theories explaining maintenance of MHC polymorphism have been
proposed decades ago, empirical tests of some of the most influential
hypotheses are scant. Most notably, predictions about frequency-dependent
selection (i.e. the hypothesis that rare MHC alleles should be selected for
because fast-evolving parasites will adapt to evade immune recognition by
common MHC alleles) have not been rigorously tested.  The aim of this
project is to test crucial predictions of this hypothesis using
semi-natural populations of the guppy, Poecilia reticulata. The project
will be based on Tobago and will use mesocosm setups to trace frequencies
of MHC alleles, and infection levels associated with them, over several
generations.

The PhD student will be mostly responsible for molecular analyses, but help
in running the field experiment at Tobago is also possible.

The candidate should hold MSc degree in biological sciences. Applicants
should provide the following documents:

1) Application letter
2) Copy of MSc diploma
3) CV
4) Motivation letter including description of scientific interests
5) Information on scientific activities of the candidate, including list
   of publications, active conference participation, work in scientific
   societies, honors and awards, national and international internships
6) Transcript of exam result during under graduate and 2nd level studies.
7) Information on language skills
8) Medical certificate stating candidate’s suitability to undertake
   PhD studies in biology
9) Personal questionnaire
10) Two photos 35x45 mm

To:
Dziekanat Wydziału Biologii
Uniwersytet im. Adama Mickiewicza
Ul. Umultowska 89
61-614 Poznań
by 3rd July; Interviews will be held between  8th and 11th July.

Further information can be obtained from the project leader via email:
jradwan@amu.edu.pl

j.w.radwan@gmail.com

Graduate position for a PhD in the evolutionary biology

Graduate position for a PhD in the evolutionary biology of gene networks.

1.Job/ project description:

The main objectives of the PhD project is to:

a) Develop mathematical models of the relationship between genetic and
   phenotypic variation (or genotype-phenotype map)

b) Understand how this relationship and the patterns of phenotypic
   variation possible by genetic variation in gene networks affect
   evolution.

c) Develop models about the evolution of gene networks and embryonic
   development in general.

A core concept of current evolutionary biology is the genotype-phenotype
(GP) map, which connects genetic variation to phenotypic variation
and to potential for evolutionary change. The aim of the project is
to develop or investigate models of the GP map that can be related to
specific biological study systems or specific evolutionary questions
investigated by the group. There is considerable flexibility as to the
exact topics, and the interests of the candidate will be important in
defining the study objects.

These models can be abstract or linked to specific biological systems. The
biotechnology institute includes a range of experimental biologitst
working on several systems. The supervisor of the theoretical aspects will
be Dr. Salazar-Ciudad but the PhD would include close collaboration with
Jukka Jernvall group and would include collaboration with developmental
biologists, bioinformaticians, paleontologists and other evolutionary and
systems biologists. The work may also include, optionally, collaboration,
and spending some time, in Barcelona.

The modeling can focus on gene network regulation, cell-cell
communication, cell mechanical interactions and developmental mechanisms
in general and, optionally, artifical in silico evolution.

2. Requirements:

The applicant must be a biologists, preferably with a strong background
in either evolutionary biology, developmental biology or theoretical
biology. Some knowledge of ecology, zoology, cell and molecular biology
are also desirable.

Bioinformaticians, systems biologists or computer biologists that do
not have a degree in biology (e.g. Computer scientists, physicists or
engineers) would not be considered (not replied).

Programming skills or a willingness to acquire them is required.

The most important requirement is a strong interest and motivation
on science, gene networks and evolution. A capacity for creative and
critical thinking is also desirable.

Prior experience in evolutionary or developmental biology is an advantage,
and the candidate may be required to do some programming (although how
much may depend on the exact project).

3. Description of the position:

The fellowship will be for a period of up to 4 years (100% research work:
no teaching involved).

The purpose of the fellowship is research training leading to the
successful completion of a PhD degree.

Salary according to Finnish PhD student salaries.

4. The application must include:

-Application letter including a statement of interests
-CV (summarizing degrees obtained, subjects included in degree and
grades, average grade)

-Application should be send to Isaac Salazar-Ciudad by email:

isaac.salazar@helsinki.fi

Foreign applicants are advised to attach an explanation of their
University's grading system. Please remember that all documents should
be in English.

5. Examples of recent publications by Isaac Salazar-Ciudad group.

-Salazar-Ciudad I1, Marín-Riera M. Adaptive dynamics under  
development-based genotype-phenotype maps.
Nature. 2013 May 16;497(7449):361-4.

-Salazar-Ciudad I, Jernvall J. A computational model of teeth and the  
developmental origins of morphological variation. Nature. 2010 Mar  
25;464(7288):583-6.

6. Interested candidates should check our group webpage:

http://www.biocenter.helsinki.fi/salazar/index.html

The deadline is 15 of August (although candidates may be selected before).

Isaac Salazar-Ciudad: isaac.salazar@helsinki.fi

isalazar@mappi.helsinki.fi

PhD Studentship, University of Glasgow

PhD Studentship,  University of Glasgow

Food security in the omics era: the role of polyploidy, hybridisation and
mating system on the ability of crops to adapt to changing environments

An acknowledged threat to food security is the ability of crops and
livestock to respond to increased environmental variability resulting
from climate change. In plants, crops are often selected to be able to
self-propagate but this comes at a cost to genetic variation, which could
reduce potential for adaptation to changing environments. Hybridising
different strains can increase genetic variation and combine desirable
traits from different species but this is often accompanied by doubling
of the genome (polyploidisation) to increase stability of the hybrid
combination. Theoretically, this should increase flexibility to adapt
to changing conditions. However, the relative effects of such breeding
strategies on adaptability and the consequences for yield of economically
important traits remain largely untested. Importantly, plants adapting
to changing environments need to be able to continue to attract
beneficial symbionts (pollinators and soil microbes that enable them
to process nutrients) and to combat potentially new threats (pathogens
and herbivores) but it is not known how the combination of mating
system, ploidy and hybridisation affect such interactions. An exciting
technological development is characterisation of microbial communities
using deep sequencing approaches. The vast amounts of data generated
and the difficulty of resolving species based on short sequences means
that improved methods need to be developed for characterising microbial
diversity and interpreting what this means for interacting organisms.

Using a common garden approach, combined with generation and analysis of
deep sequencing data, and development of advanced statistical approaches
to characterising biodiversity, the purpose of this multidisciplinary
project is to use economically important Brassica napus (oilseed rape,
which is used for both biofuel and edible oil production and is a
polyploid hybrid that reproduces by self-fertilising) as a model to
investigate:
1) the relative ability of plants with different traits to adapt to new
   environments;
2) the role of the microbial community in plant adaptation;
3) the consequences of the interaction between plant fitness and
   microbial community diversity for oil seed yield.

Project team:

Dr Barbara Mable (Principal investigator), Institute of Biodiversity,
Animal Health & Comparative Medicine

Dr Christina Cobbold (Co-investigator), School of Mathematics and
Statistics

Dr Bill Mullen (Co-investigator), Institute of Cardiovascular and
Medical Sciences

Dr Chris Quince (Co-investigator), School of Engineering

Mr. Stephen Herrington (Project Partner), Curator, Glasgow Botanic Gardens

Application Process: Please contact the Principal investigator
(Barbara.mable@glasgow.ac.uk) directly
to enquire about applying for this scholarship.  In the first instance,
please send your CV and a written personal statement (no more than 300
words) of why you are interested in applying for this PhD position.

Eligibility: There are no citizenship or residency restrictions but
applicants should have an equivalent of a UK 2:1 (B average) in a relevant
undergraduate degree and/or have passed a Master's degree with at least
a Merit (B average).   This project requires strong quantitative skills
but prior experience with advanced statistics or bioinformatics is
not required.

Deadlines: We are still accepting applicants for this position and will
do so until we have found a suitable candidate.

Barbara.Mable@glasgow.ac.uk

Two 4-year Ph.D. positions in Evolutionary Genomics

Two 4-year Ph.D. positions in Evolutionary Genomics are available at the 
Molecular Evolution programme, Uppsala University.

Evolutionary genomics of microbial eukaryotes (Project 1, Jan Andersson 
group): The position is within a research project on diplomonads, a 
group of eukaryotic microbes that includes human and fish pathogens. In 
the Ph.D. project you will use bioinformatics tools to study genome 
sequence data. The overall goal is to understand how genomic processes 
affect the biology and pathogenicity of these organisms. More 
information: 
http://www.icm.uu.se/research/Molecular-Evolution/People/jan-andersson/?languageId=1

Functional and evolutionary genomics of symbiotic bacteria and their 
animal hosts (Project 2, Lisa Klasson group): The overall aim of the 
project is to use large-scale sequencing of DNA and RNA in order to 
study how symbiotic interactions between bacteria and animal hosts 
affect both partners' genetic material and evolution. More information: 
http://www.icm.uu.se/faculty-research/Molecular-Evolution/People/lisa-klasson/?languageId=1

Qualifications: The candidate should have a master degree or equal in 
biology, biotechnology, or bioinformatics. Previous experience of 
working with next-generation-sequencing data and bioinformatic analyses 
is a plus, familiarity with work in a Linux/Unix environment and a 
scripting language such as Perl is desirable. The candidate needs to be 
proficient in both written and spoken English.

For more information and how to apply:
Project 1: http://www.uu.se/en/jobs/?positionId=38851
Project 2: http://www.uu.se/en/jobs/?positionId=38849

Jan Andersson 

Saturday, June 7, 2014

3 PhD scholarships in Web Science: programming and querying linked data & social computation

3 PhD scholarships in Web Science: programming and querying linked data & social computation


Job Description
1. Programming with linked data
This is a joint project with the excellent research department of a large corporation exploiting knowledge about functional programming and the programming environment F# (http://research.microsoft.com/fsharp)

2. Indexing linked data
This is research work continuing our award-winning Linked Data environment SchemEx (http://challenge.semanticweb.org/2011/).

3. Social computation
This is research work exploiting our previous work on preference aggregation and provenance.

For more information: http://west.uni-koblenz.de/Jobs
Full Doctorate
yes
Research Stay
yes
Paid position?
yes
Start
01.04.2014
Length
36 months
Working Language
English, German
Language of the Doctoral Thesis
English, German

Requirements for Applicant

Subject Requirements (Qualification)
Master of Science in discipline relevant for Web Science with computer science at least as minor
Type of Persons
PhD student
Compulsory Attachments
  • Curriculum vitae
  • Copy of university degree
  • High school diploma
  • Letter of motivation

University / Organisation advertising the position

University / Organisation
Universität Koblenz-Landau - Präsidialamt Mainz
55118 Mainz
Faculty / Institute
Institute for Web Science and Technologies
Mainz
http://west.uni-koblenz.de/
Coordinator / Supervisor of the Doctoral Thesis
Herr Prof. Dr. Steffen Staab

PhD Positions in Chemistry, Physics, and Biology

PhD Positions in Chemistry, Physics, and Biology


Job Description
The International Helmholtz Research School of Biophysics and Soft Matter (IHRS BioSoft) at Forschungszentrum Jülich, Heinrich-Heine- Universität Düsseldorf, Universität zu Köln, and Forschungszentrum caesar Bonn offers positions for three-year PhD projects. Scientists in our institutes work in the areas of physics, chemistry, and biology, while the research school provides an in-depth training in biophysics and soft matter. A variety of experimental and theoretical tools enables PhD students to gain deeper understanding of structure, dynamics, and function of complex systems. Our complementary course programme reflects the increasing importance of interdisciplinary knowledge in research and provides comprehensive training opportunities in both scientific and transferable skills.

Topics for the PhD thesis can be selected from the following areas:
- Complex Fluids
- Supramolecular/Amphiphilic Self-Assembly
- Colloid and Polymer Physics
- Structural Biochemistry
- Dynamics of Macromolecules
- Molecular Biophysics
- Receptor-Ligand Interactions
- Cellular Signalling Pathways
- Molecular Sensory Systems
- Bioelectronics
- Biomechanics
- Artificial and Biological Membranes
- Cellular Biophysics

Our institutes offer a large variety of state-of-the-art techniques:
- Optical Spectroscopy
- Microscopy Techniques
- Light, Neutron, and X-Ray Scattering
- Computer Simulations
- NMR
- Rheology
- and many more

You can find further information on our website:
http://www.ihrs-biosoft.de

To apply, please use our application form:
http://www.ihrs-biosoft.de/admission
Full Doctorate
yes
Research Stay
no
Paid position?
yes
Length
36 months
Working Language
English
Language of the Doctoral Thesis
English, German

Requirements for Applicant

Subject Requirements (Qualification)
The IHRS BioSoft is open to highly qualified and motivated applicants from all countries. Applicants should hold a master´s or other degree comparable to a German university master´s degree in chemical, biological, or physical sciences. The teaching language is English, sufficient command of the language is required for acceptance.
Type of Persons
PhD student
Compulsory Attachments
  • see www.ihrs-biosoft.de/admission

University / Organisation advertising the position

University / Organisation
Helmholtz Gemeinschaft / Forschungszentrum Jülich
52428 Jülich
http://www.fz-juelich.de/
Faculty / Institute
International Helmholtz Research School of Biophysics and Soft Matter (IHRS BioSoft)
Jülich
http://www.ihrs-biosoft.de/ihrs-biosoft/EN/Home/home_node.html

10 PhD Positions in Molecular Cell Biology

Job Description

The International PhD Program of the Max Delbruck Centre for Molecular Medicine (MDC) in Berlin offers 10 PhD Positions. This is an interdisciplinary program for students interested in basic, clinical and translational research in an international setting. The MDC hosts 60 research groups and 350 doctorate students working in the fields of
Molecular Biology
Cardiovascular & Metabolic Research
Cancer Biology
Developmental Biology
Medical Systems Biology
Structural Biology
Neurobiology

On joining the Helmholtz Graduate School Molecular Cell Biology at the MDC, PhD students receive interdisciplinary training and support such as travel grants for conferences and external courses, participation in Summer Schools and PhD Retreats. Students may join the special research schools in Cell Signalling and Gene Regulation (German-Israeli SignGene Research School), Systems Biology (MDC-NYU PhD Exchange Program). Molecular Neurobiology (MolNeuro) or Translational Cardiovascular Medicine (TransCard). The Graduate School of the MDC works in close collaboration with Berlin universities, the Freie Universität Berlin und Humboldt Universität zu Berlin. The program language is English. Visit our website to learn more about the MDC and PhD program at
http://www.mdc-berlin.de/phd

Application deadline is July 15th, 2014

To apply and for more information please refer to:
http://www.mdc-berlin.de/application
Full Doctorate
yes
Research Stay
no
Paid position?
yes
Start
01.01.2015
Length
36 months
Working Language
English, German
Language of the Doctoral Thesis
English, German

Requirements for Applicant

Subject Requirements (Qualification)
This is a unique opportunity to develop your research career at the interface of basic molecular biology and translational medicine. We invite candidates of any nationality who hold or anticipate receiving a Master´s degree or equivalent in a relevant field before May 1, 2015.
Type of Persons
PhD student
Compulsory Attachments
  • Curriculum vitae
  • Reports, certificates
  • Letter of motivation

University / Organisation advertising the position

University / Organisation
Stiftung Max-Delbrück-Centrum für Molekulare Medizin (MDC) Berlin-Buch
13125 Berlin
Faculty / Institute
Helmholtz Graduate School for Molecular Medicine
Berlin
www.mdc-berlin.de/phd
Coordinator / Supervisor of the Doctoral Thesis
Frau Dr. Michaela Herzig
http://www.mdc-berlin.de/phd